A novel assembly pipeline and functional annotations for targeted sequencing: A case study on the globally threatened Margaritiferidae (Bivalvia: Unionida). Gomes‐dos‐Santos, A., Froufe, E., Pfeiffer, J. M., Johnson, N. A., Smith, C. H., Machado, A. M., ... & Lopes Lima, M.
2023Molecular Ecology Resources. Multilocus species delimitation analyses show junior synonyms and deep-sea unknown species of genus Gaidropsarus (Teleostei: Gadiformes) in the North Atlantic/Mediterranean Sea area. Barros-García, D., Comesaña, Á. S., Bañón, R., Baldó, F., Arronte, J. C., Froufe, E., & De Carlos, A.
2022Mar Biol 169, 131. Freshwater mussels (Bivalvia: Unionidae) from the rising sun (Far East Asia): phylogeny, systematics, and distribution.Lopes-Lima, M., Hattori, A., Kondo, T., Lee, J. H., Kim, S. K., Shirai, A., ... & Froufe, E.
2020Molecular Phylogenetics and Evolution, 146, 106755. Evaluating a species phylogeny using ddRAD SNPs: Cyto-nuclear discordance and introgression in the salmonid genus Thymallus (Salmonidae). Secci-Petretto, G., Englmaier, G. K., Weiss, S. J., Antonov, A., Persat, H., Denys, G. P., ... & Froufe, E.
2023Molecular Phylogenetics and Evolution, 178, 107654 Joint species distribution models unveil co‐occurrences between freshwater mussels and their fish hosts. da Silva, J. P., Goncalves, D. V., Garcia‐Raventós, A., Lopes‐Lima, M., Varandas, S., Froufe, E., Teixeira, A., Hui, F. K.C., Filipe, A. F., Sousa. R.
2023Journal of Biogeography 50, no. 4: 730-742 PacBio Hi-Fi genome assembly of the Iberian dolphin freshwater mussel Unio delphinus Spengler, 1793.Gomes-dos-Santos, A., Lopes-Lima, M., Machado, M. A., Teixeira, A., C. Castro, L. F., & Froufe, E.
2023Scientific Data, 10(1), 340.